2010
Original Papers
- Tanaka, R., Rothbart, M., Oka, S., Takabayashi, A., Takahashi, K., Shibata, M., Myouga, F., Motohashi, R., Shinozaki, K., Grimm, B. and Tanaka, A. (2010) LIL3, a light-harvesting-like protein, plays an essential role in chlorophyll and tocopherol biosynthesis. Proceedings of the National Academy of Sciences of the United States of America, 107, 16721-16725.
- Kuromori, T. and Shinozaki, K. (2010) ABA transport factors found in Arabidopsis ABC transporters. Plant Signal Behav, 5, 1124-1126.
- Taji, T., Komatsu, K., Katori, T., Kawasaki, Y., Sakata, Y., Tanaka, S., Kobayashi, M., Toyoda, A., Seki, M. and Shinozaki, K. (2010) Comparative genomic analysis of 1047 completely sequenced cDNAs from an Arabidopsis-related model halophyte, Thellungiella halophila. BMC Plant Biol., 10, 261.
- Hirai, M. Y., Sawada, Y., Kanaya, S., Kuromori, T., Kobayashi, M., Klausnitzer, R., Hanada, K., Akiyama, K., Sakurai, T., Saito, K. and Shinozaki, K. (2010) Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scale bioresources. J. Plant Res., 123, 291-298.
- Mizoguchi, M., Umezawa, T., Nakashima, K., Kidokoro, S., Takasaki, H., Fujita, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2010) Two closely related subclass II SnRK2 protein kinases cooperatively regulate drought-inducible gene expression. Plant Cell Physiol., 51, 842-847.
- Osakabe, Y., Mizuno, S., Tanaka, H., Maruyama, K., Osakabe, K., Todaka, D., Fujita, Y., Kobayashi, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2010) Overproduction of the membrane-bound receptor-like protein kinase 1, RPK1, enhances abiotic stress tolerance in Arabidopsis. The Journal of biological chemistry, 285, 9190-9201.
- Chikayama, E., Sekiyama, Y., Okamoto, M., Nakanishi, Y., Tsuboi, Y., Akiyama, K., Saito, K., Shinozaki, K. and Kikuchi, J. (2010) Statistical indices for simultaneous large-scale metabolite detections for a single NMR spectrum. Anal Chem, 82, 1653-1658.
- Yamanaka, T., Nakagawa, Y., Mori, K., Nakano, M., Imamura, T., Kataoka, H., Terashima, A., Iida, K., Kojima, I., Katagiri, T., Shinozaki, K. and Iida, H. (2010) MCA1 and MCA2 that mediate Ca2+ uptake have distinct and overlapping roles in Arabidopsis. Plant Physiol, 152, 1284-1296.
- Numa, H., Kim, J. M., Matsui, A., Kurihara, Y., Morosawa, T., Ishida, J., Mochizuki, Y., Kimura, H., Shinozaki, K., Toyoda, T., Seki, M., Yoshikawa, M. and Habu, Y. (2010) Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana. The EMBO journal, 29, 352-362.
- Mochida, K., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2010a) LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors. Bioinformatics, 26, 290-291.
- Schmutz, J., Cannon, S. B., Schlueter, J., Ma, J., Mitros, T., Nelson, W., Hyten, D. L., Song, Q., Thelen, J. J., Cheng, J., Xu, D., Hellsten, U., May, G. D., Yu, Y., Sakurai, T., Umezawa, T., Bhattacharyya, M. K., Sandhu, D., Valliyodan, B., Lindquist, E., Peto, M., Grant, D., Shu, S., Goodstein, D., Barry, K., Futrell-Griggs, M., Abernathy, B., Du, J., Tian, Z., Zhu, L., Gill, N., Joshi, T., Libault, M., Sethuraman, A., Zhang, X. C., Shinozaki, K., Nguyen, H. T., Wing, R. A., Cregan, P., Specht, J., Grimwood, J., Rokhsar, D., Stacey, G., Shoemaker, R. C. and Jackson, S. A. (2010) Genome sequence of the palaeopolyploid soybean. Nature, 463, 178-183.
- Yamada, K., Osakabe, Y., Mizoi, J., Nakashima, K., Fujita, Y., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2010) Functional analysis of an Arabidopsis thaliana abiotic stress-inducible facilitated diffusion transporter for monosaccharides. The Journal of biological chemistry, 285, 1138-1146.
- Okuda, K., Hammani, K., Tanz, S. K., Peng, L., Fukao, Y., Myouga, F., Motohashi, R., Shinozaki, K., Small, I. and Shikanai, T. (2010) The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts. The Plant journal 61, 339-349.
- Kuromori, T., Miyaji, T., Yabuuchi, H., Shimizu, H., Sugimoto, E., Kamiya, A., Moriyama, Y. and Shinozaki, K. (2010) ABC transporter AtABCG25 is involved in abscisic acid transport and responses. Proceedings of the National Academy of Sciences of the United States of America, 107, 2361-2366.
- Myouga, F., Akiyama, K., Motohashi, R., Kuromori, T., Ito, T., Iizumi, H., Ryusui, R., Sakurai, T. and Shinozaki, K. (2010) The Chloroplast Function Database: a large-scale collection of Arabidopsis Ds/Spm- or T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis. Plant J, 61, 529-542.
- Hanada, K., Akiyama, K., Sakurai, T., Toyoda, T., Shinozaki, K. and Shiu, S. H. (2010) sORF finder: a program package to identify small open reading frames with high coding potential. Bioinformatics, 26, 399-400.
- Matsukura, S., Mizoi, J., Yoshida, T., Todaka, D., Ito, Y., Maruyama, K., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2010) Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes. Molecular genetics and genomics : MGG, 283, 185-196.
- Yoshida, T., Fujita, Y., Sayama, H., Kidokoro, S., Maruyama, K., Mizoi, J., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2010) AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation. The Plant journal, 61, 672-685.
- Katori, T., Ikeda, A., Iuchi, S., Kobayashi, M., Shinozaki, K., Maehashi, K., Sakata, Y., Tanaka, S. and Taji, T. (2010) Dissecting the genetic control of natural variation in salt tolerance of Arabidopsis thaliana accessions. J. Exp. Bot., 61, 1125-1138.
- Mitsuda, N., Ikeda, M., Takada, S., Takiguchi, Y., Kondou, Y., Yoshizumi, T., Fujita, M., Shinozaki, K., Matsui, M. and Ohme-Takagi, M. (2010) Efficient yeast one-/two-hybrid screening using a library composed only of transcription factors in Arabidopsis thaliana. Plant Cell Physiol., 51, 2145-2151.
- Okamoto, M., Tatematsu, K., Matsui, A., Morosawa, T., Ishida, J., Tanaka, M., Endo, T. A., Mochizuki, Y., Toyoda, T., Kamiya, Y., Shinozaki, K., Nambara, E. and Seki, M. (2010) Genome-wide analysis of endogenous abscisic acid-mediated transcription in dry and imbibed seeds of Arabidopsis using tiling arrays. Plant J, 62, 39-51.
- Mochida, K., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2010b) Genome-wide analysis of two-component systems and prediction of stress-responsive two-component system members in soybean. DNA Res, 17, 303-324.
Review Papers
- Umezawa, T., Nakashima, K., Miyakawa, T., Kuromori, T., Tanokura, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2010) Molecular basis of the core regulatory network in aba responses: sensing, signaling and transport. Plant Cell Physiol, 51, 1821-1839.
- Shinozaki, K. (2010) The ICAR2010 for development of Arabidopsis research beyond 2010. J. Plant Res., 123, 265-266.
- Hirayama, T. and Shinozaki, K. (2010) Research on plant abiotic stress responses in the post-genome era: past, present and future. Plant J, 61, 1041-1052.
- Tran, L. S., Nishiyama, R., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2010a) Potential utilization of NAC transcription factors to enhance abiotic stress tolerance in plants by biotechnological approach. GM crops, 1, 32-39.
- Tran, L. S., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2010b) Role of cytokinin responsive two-component system in ABA and osmotic stress signalings. Plant signaling & behavior, 5, 148-150.
- Urano, K., Kurihara, Y., Seki, M. and Shinozaki, K. (2010) 'Omics' analyses of regulatory networks in plant abiotic stress responses. Curr. Opin. Plant Biol., 13, 132-138.
- Mochida, K. and Shinozaki, K. (2010) Genomics and bioinformatics resources for crop improvement. Plant Cell Physiol., 51, 497-523.
- Kim, J. M., To, T. K., Nishioka, T. and Seki, M. (2010) Chromatin regulation functions in plant abiotic stress responses. Plant, Cell Environ., 33, 604-611.
2009
Original Papers
- Kurihara, Y., Kaminuma, E., Matsui, A., Kawashima, M., Tanaka, M., Morosawa, T., Ishida, J., Mochizuki, Y., Shinozaki, K., Toyoda, T. and Seki, M. (2009a) Transcriptome analyses revealed diverse expression changes in ago1 and hyl1 Arabidopsis mutants. Plant Cell Physiol, 50, 1715-1720.
- Umezawa, T., Sugiyama, N., Mizoguchi, M., Hayashi, S., Myouga, F., Yamaguchi-Shinozaki, K., Ishihama, Y., Hirayama, T. and Shinozaki, K. (2009) Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis. Proc Natl Acad Sci U S A, 106, 17588-17593.
- Yamamoto, Y. Y., Yoshitsugu, T., Sakurai, T., Seki, M., Shinozaki, K. and Obokata, J. (2009) Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis. The Plant journal 60, 350-362.
- Tsutsui, T., Kato, W., Asada, Y., Sako, K., Sato, T., Sonoda, Y., Kidokoro, S., Yamaguchi-Shinozaki, K., Tamaoki, M., Arakawa, K., Ichikawa, T., Nakazawa, M., Seki, M., Shinozaki, K., Matsui, M., Ikeda, A. and Yamaguchi, J. (2009) DEAR1, a transcriptional repressor of DREB protein that mediates plant defense and freezing stress responses in Arabidopsis. J. Plant Res., 122, 633-643.
- Sawaki, Y., Iuchi, S., Kobayashi, Y., Ikka, T., Sakurai, N., Fujita, M., Shinozaki, K., Shibata, D., Kobayashi, M. and Koyama, H. (2009) STOP1 regulates multiple genes that protect arabidopsis from proton and aluminum toxicities. Plant Physiol, 150, 281-294.
- Urano, K., Maruyama, K., Ogata, Y., Morishita, Y., Takeda, M., Sakurai, N., Suzuki, H., Saito, K., Shibata, D., Kobayashi, M., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2009) Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. Plant J, 57, 1065-1078.
- Iida, K., Fukami-Kobayashi, K., Toyoda, A., Sakaki, Y., Kobayashi, M., Seki, M. and Shinozaki, K. (2009) Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs. DNA Res., 16, 155-164.
- Nozawa, A., Matsubara, Y., Tanaka, Y., Takahashi, H., Akagi, T., Seki, M., Shinozaki, K., Endo, Y. and Sawasaki, T. (2009) Construction of a protein library of Arabidopsis transcription factors using a wheat cell-free protein production system and its application for DNA binding analysis. Biosci., Biotechnol., Biochem., 73, 1661-1664.
- Nakashima, K., Fujita, Y., Kanamori, N., Katagiri, T., Umezawa, T., Kidokoro, S., Maruyama, K., Yoshida, T., Ishiyama, K., Kobayashi, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2009) Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy. Plant Cell Physiol., 50, 1345-1363.
- Mochida, K., Yoshida, T., Sakurai, T., Ogihara, Y. and Shinozaki, K. (2009a) TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics. Plant Physiol, 150, 1135-1146.
- Makita, Y., Kobayashi, N., Mochizuki, Y., Yoshida, Y., Asano, S., Heida, N., Deshpande, M., Bhatia, R., Matsushima, A., Ishii, M., Kawaguchi, S., Iida, K., Hanada, K., Kuromori, T., Seki, M., Shinozaki, K. and Toyoda, T. (2009) PosMed-plus: an intelligent search engine that inferentially integrates cross-species information resources for molecular breeding of plants. Plant Cell Physiol, 50, 1249-1259.
- Kuromori, T., Takahashi, S., Kondou, Y., Shinozaki, K. and Matsui, M. (2009) Phenome analysis in plant species using loss-of-function and gain-of-function mutants. Plant Cell Physiol, 50, 1215-1231.
- Okuda, K., Chateigner-Boutin, A. L., Nakamura, T., Delannoy, E., Sugita, M., Myouga, F., Motohashi, R., Shinozaki, K., Small, I. and Shikanai, T. (2009) Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts. The Plant cell, 21, 146-156.
- Kurihara, Y., Matsui, A., Hanada, K., Kawashima, M., Ishida, J., Morosawa, T., Tanaka, M., Kaminuma, E., Mochizuki, Y., Matsushima, A., Toyoda, T., Shinozaki, K. and Seki, M. (2009b) Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis. Proc Natl Acad Sci U S A, 106, 2453-2458.
- Matsuda, F., Yonekura-Sakakibara, K., Niida, R., Kuromori, T., Shinozaki, K. and Saito, K. (2009) MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites. Plant J, 57, 555-577.
- Sato, A., Sato, Y., Fukao, Y., Fujiwara, M., Umezawa, T., Shinozaki, K., Hibi, T., Taniguchi, M., Miyake, H., Goto, D. B. and Uozumi, N. (2009) Threonine at position 306 of the KAT1 potassium channel is essential for channel activity and is a target site for ABA-activated SnRK2/OST1/SnRK2.6 protein kinase. The Biochemical journal, 424, 439-448.
- Fujita, Y., Nakashima, K., Yoshida, T., Katagiri, T., Kidokoro, S., Kanamori, N., Umezawa, T., Fujita, M., Maruyama, K., Ishiyama, K., Kobayashi, M., Nakasone, S., Yamada, K., Ito, T., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2009) Three SnRK2 protein kinases are the main positive regulators of abscisic acid signaling in response to water stress in Arabidopsis. Plant Cell Physiol., 50, 2123-2132.
- Nishimura, N., Okamoto, M., Narusaka, M., Yasuda, M., Nakashita, H., Shinozaki, K., Narusaka, Y. and Hirayama, T. (2009) ABA hypersensitive germination2-1 causes the activation of both abscisic acid and salicylic acid responses in Arabidopsis. Plant Cell Physiol., 50, 2112-2122.
- Mochida, K., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2009b) In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean. DNA Res, 16, 353-369.
- Kidokoro, S., Maruyama, K., Nakashima, K., Imura, Y., Narusaka, Y., Shinwari, Z. K., Osakabe, Y., Fujita, Y., Mizoi, J., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2009) The phytochrome-interacting factor PIF7 negatively regulates DREB1 expression under circadian control in Arabidopsis. Plant Physiol, 151, 2046-2057.
- Hanada, K., Kuromori, T., Myouga, F., Toyoda, T. and Shinozaki, K. (2009a) Increased expression and protein divergence in duplicate genes is associated with morphological diversification. PLoS Genet, 5, e1000781.
- Hanada, K., Higuchi, M., Okamoto, M., Toyoda, T., Seki, M., Matsui, M. and Shinozaki, K. (2009b) Functional analysis of small open reading frames with coding potential in intergenic regions of plant genome (A. thaliana and O. sativa). Genes Genet. Syst., 84, 459-459.
- Maruyama, K., Takeda, M., Kidokoro, S., Yamada, K., Sakuma, Y., Urano, K., Fujita, M., Yoshiwara, K., Matsukura, S., Morishita, Y., Sasaki, R., Suzuki, H., Saito, K., Shibata, D., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2009) Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A. Plant Physiol, 150, 1972-1980.
- Sato, K., Shin-I, T., Seki, M., Shinozaki, K., Yoshida, H., Takeda, K., Yamazaki, Y., Conte, M. and Kohara, Y. (2009) Development of 5006 Full-Length CDNAs in Barley: A Tool for Accessing Cereal Genomics Resources. DNA Res., 16, 81-89.
- Takahashi, H., Nozawa, A., Seki, M., Shinozaki, K., Endo, Y. and Sawasaki, T. (2009) A simple and high-sensitivity method for analysis of ubiquitination and polyubiquitination based on wheat cell-free protein synthesis. BMC Plant Biol., 9, 39.
- Hanada, K., Kuromori, T., Myouga, F., Toyoda, T., Li, W. H. and Shinozaki, K. (2009c) Evolutionary persistence of functional compensation by duplicate genes in Arabidopsis. Genome Biol Evol, 1, 409-414.
- Abe, K., Osakabe, K., Ishikawa, Y., Tagiri, A., Yamanouchi, H., Takyuu, T., Yoshioka, T., Ito, T., Kobayashi, M., Shinozaki, K., Ichikawa, H. and Toki, S. (2009) Inefficient double-strand DNA break repair is associated with increased fasciation in Arabidopsis BRCA2 mutants. J. Exp. Bot., 60, 2751-2761.
- Igawa, T., Fujiwara, M., Takahashi, H., Sawasaki, T., Endo, Y., Seki, M., Shinozaki, K., Fukao, Y. and Yanagawa, Y. (2009) Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. J. Exp. Bot., 60, 3067-3073.
- Kawaura, K., Mochida, K., Enju, A., Totoki, Y., Toyoda, A., Sakaki, Y., Kai, C., Kawai, J., Hayashizaki, Y., Seki, M., Shinozaki, K. and Ogihara, Y. (2009) Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns. BMC Genomics, 10, 271.
- Mochida, K., Furuta, T., Ebana, K., Shinozaki, K. and Kikuchi, J. (2009c) Correlation exploration of metabolic and genomic diversity in rice. BMC Genomics, 10, 568.
Review Papers
- Seki, M., Kamiya, A., Carninci, P., Hayashizaki, Y. and Shinozaki, K. (2009) Generation of full-length cDNA libraries: focus on plants. Methods Mol Biol, 533, 49-68.
- Shinozaki, K. and Sakakibara, H. (2009) Omics and bioinformatics: an essential toolbox for systems analyses of plant functions beyond 2010. Plant Cell Physiol., 50, 1177-1180.
- Seki, M. and Shinozaki, K. (2009) Functional genomics using RIKEN Arabidopsis thaliana full-length cDNAs. J. Plant Res., 122, 355-366.
- 梅澤 泰史 and 篠崎 一雄. (2009) 植物のシグナル伝達研究とリン酸化プロテオーム解析. 実験医学, Vol. 27, pp. 2570-2575.
2008
Original Papers
- Hanada, K., Zou, C., Lehti-Shiu, M. D., Shinozaki, K. and Shiu, S. H. (2008) Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiol, 148, 993-1003.
- Myouga, F., Hosoda, C., Umezawa, T., Iizumi, H., Kuromori, T., Motohashi, R., Shono, Y., Nagata, N., Ikeuchi, M. and Shinozaki, K. (2008) A heterocomplex of iron superoxide dismutases defends chloroplast nucleoids against oxidative stress and is essential for chloroplast development in Arabidopsis. Plant Cell, 20, 3148-3162.
- Shimizu, H., Peng, L., Myouga, F., Motohashi, R., Shinozaki, K. and Shikanai, T. (2008) CRR23/NdhL is a subunit of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis. Plant Cell Physiol., 49, 835-842.
- Cartagena, J. A., Matsunaga, S., Seki, M., Kurihara, D., Yokoyama, M., Shinozaki, K., Fujimoto, S., Azumi, Y., Uchiyama, S. and Fukui, K. (2008) The Arabidopsis SDG4 contributes to the regulation of pollen tube growth by methylation of histone H3 lysines 4 and 36 in mature pollen. Dev. Biol., 315, 355-368.
- Yamasaki, K., Kigawa, T., Inoue, M., Watanabe, S., Tateno, M., Seki, M., Shinozaki, K. and Yokoyama, S. (2008) Structures and evolutionary origins of plant-specific transcription factor DNA-binding domains. Plant physiology and biochemistry : PPB / Societe francaise de physiologie vegetale, 46, 394-401.
- Garcia, M., Myouga, F., Takechi, K., Sato, H., Nabeshima, K., Nagata, N., Takio, S., Shinozaki, K. and Takano, H. (2008) An Arabidopsis homolog of the bacterial peptidoglycan synthesis enzyme MurE has an essential role in chloroplast development. The Plant journal, 53, 924-934.
- Umezawa, T., Sakurai, T., Totoki, Y., Toyoda, A., Seki, M., Ishiwata, A., Akiyama, K., Kurotani, A., Yoshida, T., Mochida, K., Kasuga, M., Todaka, D., Maruyama, K., Nakashima, K., Enju, A., Mizukado, S., Ahmed, S., Yoshiwara, K., Harada, K., Tsubokura, Y., Hayashi, M., Sato, S., Anai, T., Ishimoto, M., Funatsuki, H., Teraishi, M., Osaki, M., Shinano, T., Akashi, R., Sakaki, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2008) Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library. DNA Res, 15, 333-346.
- Habu, Y., Yoshikawa, M., Kurihara, Y., Matsui, A., Shinozaki, K., Numa, H., Toyoda, T. and Seki, M. (2008) A genome-wide survey for endogenous targets of MOM1 that is required for the maintenance of transcriptional gene silencing in Arabidopsis. Genes Genet. Syst., 83, 514-514.
- Yoshida, T., Sakuma, Y., Todaka, D., Maruyama, K., Qin, F., Mizoi, J., Kidokoro, S., Fujita, Y., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2008) Functional analysis of an Arabidopsis heat-shock transcription factor HsfA3 in the transcriptional cascade downstream of the DREB2A stress-regulatory system. Biochem. Biophys. Res. Commun., 368, 515-521.
- Taji, T., Sakurai, T., Mochida, K., Ishiwata, A., Kurotani, A., Totoki, Y., Toyoda, A., Sakaki, Y., Seki, M., Ono, H., Sakata, Y., Tanaka, S. and Shinozaki, K. (2008) Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila. BMC Plant Biol., 8, 115. >
Review Papers
- 伊藤 卓也 and 篠崎 一雄 (2008) 花粉制御への一歩 - 花粉成熟に必須なシロイヌナズナMSI転写因子の同定. ブレインテクノニュース, 127, 7-11.
2007
Original Papers
- Miwa, K., Takano, J., Omori, H., Seki, M., Shinozaki, K. and Fujiwara, T. (2007) Plants tolerant of high boron levels. Science, 318, 1417.
- Ito, T., Nagata, N., Yoshiba, Y., Ohme-Takagi, M., Ma, H. and Shinozaki, K. (2007) Arabidopsis MALE STERILITY1 encodes a PHD-type transcription factor and regulates pollen and tapetum development. Plant Cell, 19, 3549-3562.
- Nakamura, H., Hakata, M., Amano, K., Miyao, A., Toki, N., Kajikawa, M., Pang, J., Higashi, N., Ando, S., Toki, S., Fujita, M., Enju, A., Seki, M., Nakazawa, M., Ichikawa, T., Shinozaki, K., Matsui, M., Nagamura, Y., Hirochika, H. and Ichikawa, H. (2007) A genome-wide gain-of function analysis of rice genes using the FOX-hunting system. Plant Mol. Biol., 65, 357-371.
- Ukitsu, H., Kuromori, T., Toyooka, K., Goto, Y., Matsuoka, K., Sakuradani, E., Shimizu, S., Kamiya, A., Imura, Y., Yuguchi, M., Wada, T., Hirayama, T. and Shinozaki, K. (2007) Cytological and biochemical analysis of COF1, an Arabidopsis mutant of an ABC transporter gene. Plant Cell Physiol., 48, 1524-1533.
- Okuda, K., Myouga, F., Motohashi, R., Shinozaki, K. and Shikanai, T. (2007) Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing. Proceedings of the National Academy of Sciences of the United States of America, 104, 8178-8183.
- Takahashi, F., Yoshida, R., Ichimura, K., Mizoguchi, T., Seo, S., Yonezawa, M., Maruyama, K., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2007) The mitogen-activated protein kinase cascade MKK3-MPK6 is an important part of the jasmonate signal transduction pathway in Arabidopsis. Plant Cell, 19, 805-818.
- Tian, C., Chikayama, E., Tsuboi, Y., Kuromori, T., Shinozaki, K., Kikuchi, J. and Hirayama, T. (2007) Top-down phenomics of Arabidopsis thaliana: metabolic profiling by one- and two-dimensional nuclear magnetic resonance spectroscopy and transcriptome analysis of albino mutants. J Biol Chem, 282, 18532-18541.
- Iuchi, S., Koyama, H., Iuchi, A., Kobayashi, Y., Kitabayashi, S., Ikka, T., Hirayama, T., Shinozaki, K. and Kobayashi, M. (2007) Zinc finger protein STOP1 is critical for proton tolerance in Arabidopsis and coregulates a key gene in aluminum tolerance. Proc Natl Acad Sci U S A, 104, 9900-9905.
- Mizuno, S., Osakabe, Y., Maruyama, K., Ito, T., Osakabe, K., Sato, T., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2007) Receptor-like protein kinase 2 (RPK 2) is a novel factor controlling anther development in Arabidopsis thaliana. Plant J, 50, 751-766.
- Nishimura, N., Yoshida, T., Kitahata, N., Asami, T., Shinozaki, K. and Hirayama, T. (2007) ABA-Hypersensitive Germination1 encodes a protein phosphatase 2C, an essential component of abscisic acid signaling in Arabidopsis seed. Plant J, 50, 935-949.
- Seki, M., Umezawa, T., Urano, K. and Shinozaki, K. (2007) Regulatory metabolic networks in drought stress responses. Curr Opin Plant Biol, 10, 296-302.
- Motohashi, R., Yamazaki, T., Myouga, F., Ito, T., Ito, K., Satou, M., Kobayashi, M., Nagata, N., Yoshida, S., Nagashima, A., Tanaka, K., Takahashi, S. and Shinozaki, K. (2007) Chloroplast ribosome release factor 1 (AtcpRF1) is essential for chloroplast development. Plant Mol. Biol., 64, 481-497.
- Mitsuda, N., Iwase, A., Yamamoto, H., Yoshida, M., Seki, M., Shinozaki, K. and Ohme-Takagi, M. (2007) NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis. The Plant cell, 19, 270-280.
- Tran, L. S., Nakashima, K., Sakuma, Y., Osakabe, Y., Qin, F., Simpson, S. D., Maruyama, K., Fujita, Y., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2007a) Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis. The Plant journal, 49, 46-63.
- Nakagawa, Y., Katagiri, T., Shinozaki, K., Qi, Z., Tatsumi, H., Furuichi, T., Kishigami, A., Sokabe, M., Kojima, I., Sato, S., Kato, T., Tabata, S., Iida, K., Terashima, A., Nakano, M., Ikeda, M., Yamanaka, T. and Iida, H. (2007) Arabidopsis plasma membrane protein crucial for Ca2+ influx and touch sensing in roots. Proceedings of the National Academy of Sciences of the United States of America, 104, 3639-3644.
- Itoh, T., Tanaka, T., Barrero, R. A., Yamasaki, C., Fujii, Y., Hilton, P. B., Antonio, B. A., Aono, H., Apweiler, R., Bruskiewich, R., Bureau, T., Burr, F., Costa de Oliveira, A., Fuks, G., Habara, T., Haberer, G., Han, B., Harada, E., Hiraki, A. T., Hirochika, H., Hoen, D., Hokari, H., Hosokawa, S., Hsing, Y. I., Ikawa, H., Ikeo, K., Imanishi, T., Ito, Y., Jaiswal, P., Kanno, M., Kawahara, Y., Kawamura, T., Kawashima, H., Khurana, J. P., Kikuchi, S., Komatsu, S., Koyanagi, K. O., Kubooka, H., Lieberherr, D., Lin, Y. C., Lonsdale, D., Matsumoto, T., Matsuya, A., McCombie, W. R., Messing, J., Miyao, A., Mulder, N., Nagamura, Y., Nam, J., Namiki, N., Numa, H., Nurimoto, S., O'Donovan, C., Ohyanagi, H., Okido, T., Oota, S., Osato, N., Palmer, L. E., Quetier, F., Raghuvanshi, S., Saichi, N., Sakai, H., Sakai, Y., Sakata, K., Sakurai, T., Sato, F., Sato, Y., Schoof, H., Seki, M., Shibata, M., Shimizu, Y., Shinozaki, K., Shinso, Y., Singh, N. K., Smith-White, B., Takeda, J., Tanino, M., Tatusova, T., Thongjuea, S., Todokoro, F., Tsugane, M., Tyagi, A. K., Vanavichit, A., Wang, A., Wing, R. A., Yamaguchi, K., Yamamoto, M., Yamamoto, N., Yu, Y., Zhang, H., Zhao, Q., Higo, K., Burr, B., Gojobori, T. and Sasaki, T. (2007) Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res., 17, 175-183.
- Tran, L. S., Urao, T., Qin, F., Maruyama, K., Kakimoto, T., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2007b) Functional analysis of AHK1/ATHK1 and cytokinin receptor histidine kinases in response to abscisic acid, drought, and salt stress in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 104, 20623-20628.
- Fujita, M., Mizukado, S., Fujita, Y., Ichikawa, T., Nakazawa, M., Seki, M., Matsui, M., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2007) Identification of stress-tolerance-related transcription-factor genes via mini-scale Full-length cDNA Over-eXpressor (FOX) gene hunting system. Biochem Biophys Res Commun, 364, 250-257.
- Nakashima, K., Tran, L. S., Van Nguyen, D., Fujita, M., Maruyama, K., Todaka, D., Ito, Y., Hayashi, N., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2007) Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. Plant J, 51, 617-630.
- Qin, F., Kakimoto, M., Sakuma, Y., Maruyama, K., Osakabe, Y., Tran, L. S., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2007) Regulation and functional analysis of ZmDREB2A in response to drought and heat stresses in Zea mays L. Plant J, 50, 54-69.
- Nanjo, T., Sakurai, T., Totoki, Y., Toyoda, A., Nishiguchi, M., Kado, T., Igasaki, T., Futamura, N., Seki, M., Sakaki, Y., Shinozaki, K. and Shinohara, K. (2007) Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones. BMC Genomics, 8, 448.
- Sakurai, T., Plata, G., Rodriguez-Zapata, F., Seki, M., Salcedo, A., Toyoda, A., Ishiwata, A., Tohme, J., Sakaki, Y., Shinozaki, K. and Ishitani, M. (2007) Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response. BMC Plant Biol, 7, 66.
- Tran, L. S., Nakashima, K., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2007c) Plant gene networks in osmotic stress response: from genes to regulatory networks. Methods Enzymol., 428, 109-128.
- Yamamoto, Y. Y., Ichida, H., Matsui, M., Obokata, J., Sakurai, T., Satou, M., Seki, M., Shinozaki, K. and Abe, T. (2007) Identification of plant promoter constituents by analysis of local distribution of short sequences. BMC Genomics, 8, 67.
Review Papers
- Shinozaki, K. (2007) Acceleration of soybean genomics using large collections of DNA markers for gene discovery. DNA Res, 14, 235.
- Shinozaki, K. and Yamaguchi-Shinozaki, K. (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot, 58, 221-227.
- 黒森 崇, 和田 拓治 and 篠崎 一雄. (2007) Saturation mutagenesisが可能なシロイヌナズナにおける遺伝子破壊系統の収集とフェノーム解析１. 生物の科学 遺伝 別冊, Vol. 21, pp. 104-107.
2006
Original Papers
- Noutoshi, Y., Kuromori, T., Wada, T., Hirayama, T., Kamiya, A., Imura, Y., Yasuda, M., Nakashita, H., Shirasu, K. and Shinozaki, K. (2006) Loss of Necrotic Spotted Lesions 1 associates with cell death and defense responses in Arabidopsis thaliana. Plant Mol Biol, 62, 29-42.
- Myouga, F., Motohashi, R., Kuromori, T., Nagata, N. and Shinozaki, K. (2006) An Arabidopsis chloroplast-targeted Hsp101 homologue, APG6, has an essential role in chloroplast development as well as heat-stress response. Plant J, 48, 249-260.
- Nishiuchi, T., Masuda, D., Nakashita, H., Ichimura, K., Shinozaki, K., Yoshida, S., Kimura, M., Yamaguchi, I. and Yamaguchi, K. (2006) Fusarium phytotoxin trichothecenes have an elicitor-like activity in Arabidopsis thaliana, but the activity differed significantly among their molecular species. Molecular plant-microbe interactions : MPMI, 19, 512-520.
- Gross, J., Cho, W. K., Lezhneva, L., Falk, J., Krupinska, K., Shinozaki, K., Seki, M., Herrmann, R. G. and Meurer, J. (2006) A plant locus essential for phylloquinone (vitamin K1) biosynthesis originated from a fusion of four eubacterial genes. The Journal of biological chemistry, 281, 17189-17196.
- Matsuda, T., Kigawa, T., Koshiba, S., Inoue, M., Aoki, M., Yamasaki, K., Seki, M., Shinozaki, K. and Yokoyama, S. (2006) Cell-free synthesis of zinc-binding proteins. J Struct Funct Genomics, 7, 93-100.
- Oono, Y., Seki, M., Satou, M., Iida, K., Akiyama, K., Sakurai, T., Fujita, M., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2006) Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays. Funct Integr Genomics, 1-23.
- Ichikawa, T., Nakazawa, M., Kawashima, M., Iizumi, H., Kuroda, H., Kondou, Y., Tsuhara, Y., Suzuki, K., Ishikawa, A., Seki, M., Fujita, M., Motohashi, R., Nagata, N., Takagi, T., Shinozaki, K. and Matsui, M. (2006) The FOX hunting system: an alternative gain-of-function gene hunting technique. Plant J, 48, 974-985.
- Kitahata, N., Han, S. Y., Noji, N., Saito, T., Kobayashi, M., Nakano, T., Kuchitsu, K., Shinozaki, K., Yoshida, S., Matsumoto, S., Tsujimoto, M. and Asami, T. (2006) A 9-cis-epoxycarotenoid dioxygenase inhibitor for use in the elucidation of abscisic acid action mechanisms. Bioorg Med Chem, 14, 5555-5561.
- Kuromori, T., Wada, T., Kamiya, A., Yuguchi, M., Yokouchi, T., Imura, Y., Takabe, H., Sakurai, T., Akiyama, K., Hirayama, T., Okada, K. and Shinozaki, K. (2006) A trial of phenome analysis using 4000 Ds-insertional mutants in gene-coding regions of Arabidopsis. Plant J, 47, 640-651.
- Machida, M., Takechi, K., Sato, H., Chung, S. J., Kuroiwa, H., Takio, S., Seki, M., Shinozaki, K., Fujita, T., Hasebe, M. and Takano, H. (2006) Genes for the peptidoglycan synthesis pathway are essential for chloroplast division in moss. Proceedings of the National Academy of Sciences of the United States of America, 103, 6753-6758.
- Yamasaki, K., Kigawa, T., Inoue, M., Yamasaki, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Tomo, Y., Terada, T., Shirouzu, M., Tanaka, A., Seki, M., Shinozaki, K. and Yokoyama, S. (2006) An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett., 580, 2109-2116.
- Umezawa, T., Okamoto, M., Kushiro, T., Nambara, E., Oono, Y., Seki, M., Kobayashi, M., Koshiba, T., Kamiya, Y. and Shinozaki, K. (2006) CYP707A3, a major ABA 8'-hydroxylase involved in dehydration and rehydration response in Arabidopsis thaliana. Plant J, 46, 171-182.
- Hasegawa, Y., Seki, M., Mochizuki, Y., Heida, N., Hirosawa, K., Okamoto, N., Sakurai, T., Satou, M., Akiyama, K., Iida, K., Lee, K., Kanaya, S., Demura, T., Shinozaki, K., Konagaya, A. and Toyoda, T. (2006) A flexible representation of omic knowledge for thorough analysis of microarray data. Plant Methods, 2, 5.
Review Papers
- Umezawa, T., Fujita, M., Fujita, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2006) Engineering drought tolerance in plants: discovering and tailoring genes to unlock the future. Curr Opin Biotechnol,
- Fujita, M., Fujita, Y., Noutoshi, Y., Takahashi, F., Narusaka, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2006) Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks. Curr Opin Plant Biol, 9, 436-442.
- Yamaguchi-Shinozaki, K. and Shinozaki, K. (2006) Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu. Rev. Plant Biol., 57, 781-803.
- Taji, T., Takahashi, S. and Shinozaki, K. (2006) Inositols and their metabolites in abiotic and biotic stress responses. Subcell Biochem, 39, 239-264.
- 中島 一雄, 篠崎 一雄, 篠崎 和子 (2006) 環境耐性作物開発のための制御因子の探索と分子育種への利用(1) レギュロンバイオテクノロジーを利用した環境ストレス耐性作物の開発の現状と展望. ブレインテクノニュース, 117, 1-7.
- 片桐 健, 梅澤 泰史, 篠崎 和子 and 篠崎 一雄 (2006) 環境耐性作物開発のための制御因子の探索と分子育種への利用(2) アブシジン酸の制御因子、シグナル伝達因子を用いたネットワーク制御による環境ストレス耐性の付与. ブレインテクノニュース, 117, 8-13.
2005
Original Papers
- Noutoshi, Y., Ito, T., Seki, M., Nakashita, H., Yoshida, S., Marco, Y., Shirasu, K. and Shinozaki, K. (2005a) A single amino acid insertion in the WRKY domain of the Arabidopsis TIR-NBS-LRR-WRKY-type disease resistance protein SLH1 (sensitive to low humidity 1) causes activation of defense responses and hypersensitive cell death. Plant J, 43, 873-888.
- Savitch, L. V., Allard, G., Seki, M., Robert, L. S., Tinker, N. A., Huner, N. P., Shinozaki, K. and Singh, J. (2005) The effect of overexpression of two Brassica CBF/DREB1-like transcription factors on photosynthetic capacity and freezing tolerance in Brassica napus. Plant Cell Physiol., 46, 1525-1539.
- Narusaka, Y., Narusaka, M., Seki, M., Ishida, J., Shinozaki, K., Nan, Y., Park, P., Shiraishi, T. and Kobayashi, M. (2005) Cytological and molecular analyses of non-host resistance of Arabidopsis thaliana to Alternaria alternata. Mol. Plant Pathol., 6, 615-627.
- Mitsuda, N., Seki, M., Shinozaki, K. and Ohme-Takagi, M. (2005) The NAC transcription factors NST1 and NST2 of Arabidopsis regulate secondary wall thickenings and are required for anther dehiscence. The Plant cell, 17, 2993-3006.
- Matsui, A., Yokoyama, R., Seki, M., Ito, T., Shinozaki, K., Takahashi, T., Komeda, Y. and Nishitani, K. (2005) AtXTH27 plays an essential role in cell wall modification during the development of tracheary elements. Plant J, 42, 525-534.
- Yamasaki, K., Kigawa, T., Inoue, M., Tateno, M., Yamasaki, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Tomo, Y., Hayami, N., Terada, T., Shirouzu, M., Tanaka, A., Seki, M., Shinozaki, K. and Yokoyama, S. (2005) Solution structure of an Arabidopsis WRKY DNA binding domain. The Plant cell, 17, 944-956.
- Bhushan, S., Stahl, A., Nilsson, S., Lefebvre, B., Seki, M., Roth, C., McWilliam, D., Wright, S. J., Liberles, D. A., Shinozaki, K., Bruce, B. D., Boutry, M. and Glaser, E. (2005) Catalysis, subcellular localization, expression and evolution of the targeting peptides degrading protease, AtPreP2. Plant Cell Physiol., 46, 985-996.
- Kitahata, N., Saito, S., Miyazawa, Y., Umezawa, T., Shimada, Y., Min, Y. K., Mizutani, M., Hirai, N., Shinozaki, K., Yoshida, S. and Asami, T. (2005) Chemical regulation of abscisic acid catabolism in plants by cytochrome P450 inhibitors. Bioorg Med Chem, 13, 4491-4498.
- Ito, T., Motohashi, R., Kuromori, T., Noutoshi, Y., Seki, M., Kamiya, A., Mizukado, S., Sakurai, T. and Shinozaki, K. (2005) A resource of 5,814 dissociation transposon-tagged and sequence-indexed lines of Arabidopsis transposed from start loci on chromosome 5. Plant Cell Physiol, 46, 1149-1153.
- Katagiri, T., Ishiyama, K., Kato, T., Tabata, S., Kobayashi, M. and Shinozaki, K. (2005) An important role of phosphatidic acid in ABA signaling during germination in Arabidopsis thaliana. Plant J, 43, 107-117.
- Noutoshi, Y., Ito, T. and Shinozaki, K. (2005b) ALBINO AND PALE GREEN 10 encodes BBMII isomerase involved in histidine biosynthesis in Arabidopsis thaliana. Plant Cell Physiol, 46, 1165-1172.
- Yamada, M., Morishita, H., Urano, K., Shiozaki, N., Yamaguchi-Shinozaki, K., Shinozaki, K. and Yoshiba, Y. (2005) Effects of free proline accumulation in petunias under drought stress. J. Exp. Bot., 56, 1975-1981.
- Sakurai, T., Satou, M., Akiyama, K., Iida, K., Seki, M., Kuromori, T., Ito, T., Konagaya, A., Toyoda, T. and Shinozaki, K. (2005) RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome. Nucleic Acids Res, 33, D647-650.
- Hiraguri, A., Itoh, R., Kondo, N., Nomura, Y., Aizawa, D., Murai, Y., Koiwa, H., Seki, M., Shinozaki, K. and Fukuhara, T. (2005) Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana. Plant Mol. Biol., 57, 173-188.
- Pantoja-Uceda, D., Lopez-Mendez, B., Koshiba, S., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Tanaka, A., Seki, M., Shinozaki, K., Yokoyama, S. and Guntert, P. (2005) Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana. Protein science : a publication of the Protein Society, 14, 224-230.
- Urano, K., Hobo, T. and Shinozaki, K. (2005) Arabidopsis ADC genes involved in polyamine biosynthesis are essential for seed development. FEBS Lett, 579, 1557-1564.
- Yamaguchi-Shinozaki, K. and Shinozaki, K. (2005) Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters. Trends Plant Sci., 10, 88-94.
- Fujita, Y., Fujita, M., Satoh, R., Maruyama, K., Parvez, M. M., Seki, M., Hiratsu, K., Ohme-Takagi, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2005) AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis. The Plant cell, 17, 3470-3488.
- Nishimura, N., Kitahata, N., Seki, M., Narusaka, Y., Narusaka, M., Kuromori, T., Asami, T., Shinozaki, K. and Hirayama, T. (2005) Analysis of ABA hypersensitive germination2 revealed the pivotal functions of PARN in stress response in Arabidopsis. Plant J, 44, 972-984.
- Toyoda, T. and Shinozaki, K. (2005) Tiling array-driven elucidation of transcriptional structures based on maximum-likelihood and Markov models. Plant J, 43, 611-621.
- Osakabe, K., Abe, K., Yamanouchi, H., Takyuu, T., Yoshioka, T., Ito, Y., Kato, T., Tabata, S., Kurei, S., Yoshioka, Y., Machida, Y., Seki, M., Kobayashi, M., Shinozaki, K., Ichikawa, H. and Toki, S. (2005) Arabidopsis Rad51B is important for double-strand DNA breaks repair in somatic cells. Plant Mol. Biol., 57, 819-833.
- Osakabe, Y., Maruyama, K., Seki, M., Satou, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2005) Leucine-rich repeat receptor-like kinase1 is a key membrane-bound regulator of abscisic acid early signaling in Arabidopsis. The Plant cell, 17, 1105-1119.
- Yoshitani, N., Satou, K., Saito, K., Suzuki, S., Hatanaka, H., Seki, M., Shinozaki, K., Hirota, H. and Yokoyama, S. (2005) A structure-based strategy for discovery of small ligands binding to functionally unknown proteins: combination of in silico screening and surface plasmon resonance measurements. Proteomics, 5, 1472-1480.
- Iida, K., Seki, M., Sakurai, T., Satou, M., Akiyama, K., Toyoda, T., Konagaya, A. and Shinozaki, K. (2005) RARTF: database and tools for complete sets of Arabidopsis transcription factors. DNA Res, 12, 247-256.
- Ito, Y., Katsura, K., Maruyama, K., Taji, T., Seki, M., Kobayashi, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2005) Functional analysis of DREB genes using transgenic rice. Plant and Cell Physiology, 46, S73-S73.
- Nguyen, V. D., Ito, Y., Nakashima, K., Tran, L. S. P., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2005) Identification of a novel cis-acting element that functions in cold-stress-response in rice. Plant and Cell Physiology, 46, S117-S117.
- Todaka, D., Ito, Y., Ohme-Takagi, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2005) Functional analysis of OsPIL5 gene down-regulated by drought stress in rice. Plant and Cell Physiology, 46, S73-S73.
- Yoshida, T., Nishimura, N., Asami, T., Shinozaki, K. and Hirayama, T. (2005) Characterization of Arabidopsis ABA hypersensitive mutant, ahg3. Plant and Cell Physiology, 46, S51-S51.
Review Papers
- 本橋 令子, 明賀 史純 and 篠崎 一雄. (2005) 核コードの葉緑体蛋白質遺伝子破壊株の収集と解析. In 亘、田中寛、正木春彦, 林. 杉. 坂. (ed.), 蛋白質核酸酵素「二層膜オルガネラの遺伝学」. 共立出版, Vol. 50, pp. 1926-1927.
- 大野 陽子, 関 原明, 篠崎 和子 and 篠崎 一雄. (2005a) 植物の根に関する諸問題—環境ストレス及びその回復過程に働く遺伝子発現応答研究の現状（２）. 農業および園芸, Vol. 80, pp. 798-806.
- 大野 陽子, 関 原明, 篠崎 和子 and 篠崎 一雄 (2005b) 植物の根に関する諸問題—環境ストレス及びその回復過程に働く遺伝子発現応答研究の現状（１）. 農業および園芸, 80, 692-701.
2004
Original Papers
- Fujita, M., Fujita, Y., Maruyama, K., Seki, M., Hiratsu, K., Ohme-Takagi, M., Tran, L. S., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2004) A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant J, 39, 863-876.
- Tran, L. S., Nakashima, K., Sakuma, Y., Simpson, S. D., Fujita, Y., Maruyama, K., Fujita, M., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2004) Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. The Plant cell, 16, 2481-2498.
- Harada, H., Kuromori, T., Hirayama, T., Shinozaki, K. and Leigh, R. A. (2004) Quantitative trait loci analysis of nitrate storage in Arabidopsis leading to an investigation of the contribution of the anion channel gene, AtCLC-c, to variation in nitrate levels. J. Exp. Bot., 55, 2005-2014.
- Sakamoto, H., Maruyama, K., Sakuma, Y., Meshi, T., Iwabuchi, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2004) Arabidopsis Cys2/His2-type zinc-finger proteins function as transcription repressors under drought, cold, and high-salinity stress conditions. Plant Physiol, 136, 2734-2746.
- Takahashi, S., Seki, M., Ishida, J., Satou, M., Sakurai, T., Narusaka, M., Kamiya, A., Nakajima, M., Enju, A., Akiyama, K., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2004) Monitoring the expression profiles of genes induced by hyperosmotic, high salinity, and oxidative stress and abscisic acid treatment in Arabidopsis cell culture using a full-length cDNA microarray. Plant Mol Biol, 56, 29-55.
- Yasuhara, M., Mitsui, S., Hirano, H., Takanabe, R., Tokioka, Y., Ihara, N., Komatsu, A., Seki, M., Shinozaki, K. and Kiyosue, T. (2004) Identification of ASK and clock-associated proteins as molecular partners of LKP2 (LOV kelch protein 2) in Arabidopsis. J. Exp. Bot., 55, 2015-2027.
- Nishimura, N., Yoshida, T., Murayama, M., Asami, T., Shinozaki, K. and Hirayama, T. (2004) Isolation and characterization of novel mutants affecting the abscisic acid sensitivity of Arabidopsis germination and seedling growth. Plant Cell Physiol., 45, 1485-1499.
- Suzuki, T., Inagaki, S., Nakajima, S., Akashi, T., Ohto, M. A., Kobayashi, M., Seki, M., Shinozaki, K., Kato, T., Tabata, S., Nakamura, K. and Morikami, A. (2004) A novel Arabidopsis gene TONSOKU is required for proper cell arrangement in root and shoot apical meristems. Plant J, 38, 673-684.
- Narusaka, Y., Narusaka, M., Seki, M., Umezawa, T., Ishida, J., Nakajima, M., Enju, A. and Shinozaki, K. (2004a) Crosstalk in the responses to abiotic and biotic stresses in Arabidopsis: analysis of gene expression in cytochrome P450 gene superfamily by cDNA microarray. Plant Mol. Biol., 55, 327-342.
- Yamasaki, K., Kigawa, T., Inoue, M., Tateno, M., Yamasaki, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Nunokawa, E., Ishizuka, Y., Terada, T., Shirouzu, M., Osanai, T., Tanaka, A., Seki, M., Shinozaki, K. and Yokoyama, S. (2004a) A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors. J. Mol. Biol., 337, 49-63.
- Zhao, L., Nakazawa, M., Takase, T., Manabe, K., Kobayashi, M., Seki, M., Shinozaki, K. and Matsui, M. (2004) Overexpression of LSH1, a member of an uncharacterised gene family, causes enhanced light regulation of seedling development. Plant J, 37, 694-706.
- Satoh, R., Fujita, Y., Nakashima, K., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2004) A novel subgroup of bZIP proteins functions as transcriptional activators in hypoosmolarity-responsive expression of the ProDH gene in Arabidopsis. Plant Cell Physiol., 45, 309-317.
- Kasuga, M., Miura, S., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2004) A combination of the Arabidopsis DREB1A gene and stress-inducible rd29A promoter improved drought- and low-temperature stress tolerance in tobacco by gene transfer. Plant Cell Physiol., 45, 346-350.
- Kuromori, T., Hirayama, T., Kiyosue, Y., Takabe, H., Mizukado, S., Sakurai, T., Akiyama, K., Kamiya, A., Ito, T. and Shinozaki, K. (2004) A collection of 11 800 single-copy Ds transposon insertion lines in Arabidopsis. Plant J, 37, 897-905.
- Nagashima, A., Hanaoka, M., Motohashi, R., Seki, M., Shinozaki, K., Kanamaru, K., Takahashi, H. and Tanaka, K. (2004) DNA microarray analysis of plastid gene expression in an Arabidopsis mutant deficient in a plastid transcription factor sigma, SIG2. Biosci., Biotechnol., Biochem., 68, 694-704.
- Han, S. Y., Kitahata, N., Saito, T., Kobayashi, M., Shinozaki, K., Yoshida, S. and Asami, T. (2004a) A new lead compound for abscisic acid biosynthesis inhibitors targeting 9-cis-epoxycarotenoid dioxygenase. Bioorg Med Chem Lett, 14, 3033-3036.
- Higuchi, M., Pischke, M. S., Mahonen, A. P., Miyawaki, K., Hashimoto, Y., Seki, M., Kobayashi, M., Shinozaki, K., Kato, T., Tabata, S., Helariutta, Y., Sussman, M. R. and Kakimoto, T. (2004) In planta functions of the Arabidopsis cytokinin receptor family. Proceedings of the National Academy of Sciences of the United States of America, 101, 8821-8826.
- Lopez-Mendez, B., Pantoja-Uceda, D., Tomizawa, T., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S. and Guntert, P. (2004) NMR assignment of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana. J. Biomol. NMR, 29, 205-206.
- Maruyama, K., Sakuma, Y., Kasuga, M., Ito, Y., Seki, M., Goda, H., Shimada, Y., Yoshida, S., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2004) Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Plant J, 38, 982-993.
- Niwa, Y., Kato, T., Tabata, S., Seki, M., Kobayashi, M., Shinozaki, K. and Moriyasu, Y. (2004) Disposal of chloroplasts with abnormal function into the vacuole in Arabidopsis thaliana cotyledon cells. Protoplasma, 223, 229-232.
- Pantoja-Uceda, D., Lopez-Mendez, B., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S. and Guntert, P. (2004) NMR assignment of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana. J. Biomol. NMR, 29, 207-208.
- Fujishige, N., Nishimura, N., Iuchi, S., Kunii, T., Shinozaki, K. and Hirayama, T. (2004) A novel Arabidopsis gene required for ethanol tolerance is conserved among plants and archaea. Plant Cell Physiol., 45, 659-666.
- Hirayama, T., Fujishige, N., Kunii, T., Nishimura, N., Iuchi, S. and Shinozaki, K. (2004) A novel ethanol-hypersensitive mutant of Arabidopsis. Plant Cell Physiol, 45, 703-711.
- Teige, M., Scheikl, E., Eulgem, T., Doczi, R., Ichimura, K., Shinozaki, K., Dangl, J. L. and Hirt, H. (2004) The MKK2 pathway mediates cold and salt stress signaling in Arabidopsis. Mol. Cell, 15, 141-152.
- Narusaka, Y., Narusaka, M., Park, P., Kubo, Y., Hirayama, T., Seki, M., Shiraishi, T., Ishida, J., Nakashima, M., Enju, A., Sakurai, T., Satou, M., Kobayashi, M. and Shinozaki, K. (2004b) RCH1, a locus in Arabidopsis that confers resistance to the hemibiotrophic fungal pathogen Colletotrichum higginsianum. Molecular plant-microbe interactions : MPMI, 17, 749-762.
- Taji, T., Seki, M., Satou, M., Sakurai, T., Kobayashi, M., Ishiyama, K., Narusaka, Y., Narusaka, M., Zhu, J. K. and Shinozaki, K. (2004) Comparative genomics in salt tolerance between Arabidopsis and aRabidopsis-related halophyte salt cress using Arabidopsis microarray. Plant Physiol, 135, 1697-1709.
- Han, S. Y., Kitahata, N., Sekimata, K., Saito, T., Kobayashi, M., Nakashima, K., Yamaguchi-Shinozaki, K., Shinozaki, K., Yoshida, S. and Asami, T. (2004b) A novel inhibitor of 9-cis-epoxycarotenoid dioxygenase in abscisic acid biosynthesis in higher plants. Plant Physiol, 135, 1574-1582.
- Urano, K., Yoshiba, Y., Nanjo, T., Ito, T., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2004) Arabidopsis stress-inducible gene for arginine decarboxylase AtADC2 is required for accumulation of putrescine in salt tolerance. Biochem Biophys Res Commun, 313, 369-375.
- Takahashi, N., Kuroda, H., Kuromori, T., Hirayama, T., Seki, M., Shinozaki, K., Shimada, H. and Matsui, M. (2004) Expression and interaction analysis of Arabidopsis Skp1-related genes. Plant Cell Physiol, 45, 83-91.
- Basset, G. J., Quinlivan, E. P., Ravanel, S., Rebeille, F., Nichols, B. P., Shinozaki, K., Seki, M., Adams-Phillips, L. C., Giovannoni, J. J., Gregory, J. F., 3rd and Hanson, A. D. (2004) Folate synthesis in plants: the p-aminobenzoate branch is initiated by a bifunctional PabA-PabB protein that is targeted to plastids. Proceedings of the National Academy of Sciences of the United States of America, 101, 1496-1501.
- Umezawa, T., Yoshida, R., Maruyama, K., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2004) SRK2C, a SNF1-related protein kinase 2, improves drought tolerance by controlling stress-responsive gene expression in Arabidopsis thaliana. Proc Natl Acad Sci U S A, 101, 17306-17311.
- Nanjo, T., Futamura, N., Nishiguchi, M., Igasaki, T., Shinozaki, K. and Shinohara, K. (2004) Characterization of full-length enriched expressed sequence tags of stress-treated poplar leaves. Plant Cell Physiol., 45, 1738-1748.
- Yamasaki, K., Kigawa, T., Inoue, M., Tateno, M., Yamasaki, T., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Tomo, Y., Hayami, N., Terada, T., Shirouzu, M., Osanai, T., Tanaka, A., Seki, M., Shinozaki, K. and Yokoyama, S. (2004b) Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1. The Plant cell, 16, 3448-3459.
- Kikuchi, J., Shinozaki, K. and Hirayama, T. (2004) Stable isotope labeling of Arabidopsis thaliana for an NMR-based metabolomics approach. Plant Cell Physiol, 45, 1099-1104.
- Takei, K., Ueda, N., Aoki, K., Kuromori, T., Hirayama, T., Shinozaki, K., Yamaya, T. and Sakakibara, H. (2004) AtIPT3 is a key determinant of nitrate-dependent cytokinin biosynthesis in Arabidopsis. Plant Cell Physiol, 45, 1053-1062.
- Ogihara, Y., Mochida, K., Kawaura, K., Murai, K., Seki, M., Kamiya, A., Shinozaki, K., Carninci, P., Hayashizaki, Y., Shin, I. T., Kohara, Y. and Yamazaki, Y. (2004) Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags. Genes Genet. Syst., 79, 227-232.
- Qin, F., Sakuma, Y., Li, J., Liu, Q., Li, Y. Q., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2004) Cloning and functional analysis of a novel DREB1/CBF transcription factor involved in cold-responsive gene expression in Zea mays L. Plant Cell Physiol., 45, 1042-1052.
- Iida, K., Seki, M., Sakurai, T., Satou, M., Akiyama, K., Toyoda, T., Konagaya, A. and Shinozaki, K. (2004) Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences. Nucleic Acids Res, 32, 5096-5103. >
Review Papers
- Seki, M., Satou, M., Sakurai, T., Akiyama, K., Iida, K., Ishida, J., Nakajima, M., Enju, A., Narusaka, M., Fujita, M., Oono, Y., Kamei, A., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2004) RIKEN Arabidopsis full-length (RAFL) cDNA and its applications for expression profiling under abiotic stress conditions. J Exp Bot, 55, 213-223.
- 中島 一雄, 篠崎 和子 and 篠崎 一雄. (2004) 植物の環境ストレスに対する応答. 日本感染生理談話会論文集「自他識別と応答のバイオフロンティア」. 日本植物病理学会, pp. 101-110.
- 刑部 祐里子, 篠崎 一雄 and 篠崎 和子. (2004) 乾燥ストレスとアブシジン酸シグナル伝達機構. 植物の生長調節. 植物調節学会, Vol. 39, pp. 158-166.
- 鳴坂 義弘, 鳴坂 真理, 関 原明, 佐藤 将一, 櫻井 哲也, 小林 正智 and 篠崎 一雄. (2004) 植物—病理微生物相互作用におけるトランスクリプトーム解析. 日本感染生理談話会論文集「自他識別と応答のバイオフロンティア」. 日本植物病理学会, pp. 77-82.
2003
Original Papers
- Yamada, K., Lim, J., Dale, J. M., Chen, H., Shinn, P., Palm, C. J., Southwick, A. M., Wu, H. C., Kim, C., Nguyen, M., Pham, P., Cheuk, R., Karlin-Newmann, G., Liu, S. X., Lam, B., Sakano, H., Wu, T., Yu, G., Miranda, M., Quach, H. L., Tripp, M., Chang, C. H., Lee, J. M., Toriumi, M., Chan, M. M., Tang, C. C., Onodera, C. S., Deng, J. M., Akiyama, K., Ansari, Y., Arakawa, T., Banh, J., Banno, F., Bowser, L., Brooks, S., Carninci, P., Chao, Q., Choy, N., Enju, A., Goldsmith, A. D., Gurjal, M., Hansen, N. F., Hayashizaki, Y., Johnson-Hopson, C., Hsuan, V. W., Iida, K., Karnes, M., Khan, S., Koesema, E., Ishida, J., Jiang, P. X., Jones, T., Kawai, J., Kamiya, A., Meyers, C., Nakajima, M., Narusaka, M., Seki, M., Sakurai, T., Satou, M., Tamse, R., Vaysberg, M., Wallender, E. K., Wong, C., Yamamura, Y., Yuan, S., Shinozaki, K., Davis, R. W., Theologis, A. and Ecker, J. R. (2003) Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 302, 842-846.
- Nanjo, T., Fujita, M., Seki, M., Kato, T., Tabata, S. and Shinozaki, K. (2003) Toxicity of free proline revealed in an arabidopsis T-DNA-tagged mutant deficient in proline dehydrogenase. Plant Cell Physiol., 44, 541-548.
- Igarashi, D., Miwa, T., Seki, M., Kobayashi, M., Kato, T., Tabata, S., Shinozaki, K. and Ohsumi, C. (2003) Identification of photorespiratory glutamate:glyoxylate aminotransferase (GGAT) gene in Arabidopsis. The Plant journal, 33, 975-987.
- Nishiyama, T., Fujita, T., Shin, I. T., Seki, M., Nishide, H., Uchiyama, I., Kamiya, A., Carninci, P., Hayashizaki, Y., Shinozaki, K., Kohara, Y. and Hasebe, M. (2003) Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution. Proceedings of the National Academy of Sciences of the United States of America, 100, 8007-8012.
- Han, S. Y., Inoue, H., Terada, T., Kamoda, S., Saburi, Y., Sekimata, K., Saito, T., Kobayashi, M., Shinozaki, K., Yoshida, S. and Asami, T. (2003) N-benzylideneaniline and N-benzylaniline are potent inhibitors of lignostilbene-a,b-dioxygenase, a key enzyme in oxidative cleavage of the central double bond of lignostilbene. J Enzyme Inhib Med Chem, 18, 279-283.
- Motohashi, R., Ito, T., Kobayashi, M., Taji, T., Nagata, N., Asami, T., Yoshida, S., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2003) Functional analysis of the 37 kDa inner envelope membrane polypeptide in chloroplast biogenesis using a Ds-tagged Arabidopsis pale-green mutant. The Plant journal, 34, 719-731.
- Oono, Y., Seki, M., Nanjo, T., Narusaka, M., Fujita, M., Satoh, R., Satou, M., Sakurai, T., Ishida, J., Akiyama, K., Iida, K., Maruyama, K., Satoh, S., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2003) Monitoring expression profiles of Arabidopsis gene expression during rehydration process after dehydration using ca 7000 full-length cDNA microarray. Plant J, 34, 868-887.
- Abe, H., Urao, T., Ito, T., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2003) Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. The Plant cell, 15, 63-78.
- Simpson, S. D., Nakashima, K., Narusaka, Y., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2003) Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene function in induction by dehydration stress and dark-induced senescence. Plant J, 33, 259-270.
- Dubouzet, J. G., Sakuma, Y., Ito, Y., Kasuga, M., Dubouzet, E. G., Miura, S., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2003) OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. The Plant journal 33, 751-763.
- Kimura, M., Yamamoto, Y. Y., Seki, M., Sakurai, T., Sato, M., Abe, T., Yoshida, S., Manabe, K., Shinozaki, K. and Matsui, M. (2003) Identification of Arabidopsis genes regulated by high light-stress using cDNA microarray. Photochem Photobiol, 77, 226-233.
- Rabbani, M. A., Maruyama, K., Abe, H., Khan, M. A., Katsura, K., Ito, Y., Yoshiwara, K., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2003) Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses. Plant Physiol, 133, 1755-1767.
- Shimada, T., Yamada, K., Kataoka, M., Nakaune, S., Koumoto, Y., Kuroyanagi, M., Tabata, S., Kato, T., Shinozaki, K., Seki, M., Kobayashi, M., Kondo, M., Nishimura, M. and Hara-Nishimura, I. (2003) Vacuolar processing enzymes are essential for proper processing of seed storage proteins in Arabidopsis thaliana. The Journal of biological chemistry, 278, 32292-32299.
- Narusaka, Y., Nakashima, K., Shinwari, Z. K., Sakuma, Y., Furihata, T., Abe, H., Narusaka, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2003a) Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. The Plant journal 34, 137-148.
- Narusaka, Y., Narusaka, M., Seki, M., Ishida, J., Nakashima, M., Kamiya, A., Enju, A., Sakurai, T., Satoh, M., Kobayashi, M., Tosa, Y., Park, P. and Shinozaki, K. (2003b) The cDNA microarray analysis using an Arabidopsis pad3 mutant reveals the expression profiles and classification of genes induced by Alternaria brassicicola attack. Plant Cell Physiol., 44, 377-387.
Review Papers
- Shinozaki, K. and Dennis, E. S. (2003) Cell signalling and gene regulation: global analyses of signal transduction and gene expression profiles. Curr. Opin. Plant Biol., 6, 405-409.
- Shinozaki, K., Yamaguchi-Shinozaki, K. and Seki, M. (2003) Regulatory network of gene expression in the drought and cold stress responses. Curr Opin Plant Biol, 6, 410-417.
- Seki, M., Kamei, A., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2003) Molecular responses to drought, salinity and frost: common and different paths for plant protection. Curr. Opin. Biotechnol., 14, 194-199.
- 太治 輝昭 and 篠崎 一雄 (2003) 環境ストレス耐性植物の分子育種. 沙漠研究, 181-188.
- 関 原明, 佐藤 将一, 石田 順子, 櫻井 哲也, 中嶋 舞子, 秋山 顕治, 槐 亜希子, 飯田 慶, 大野 陽子 and 篠崎 一雄. (2003) シロイヌナズナ完全長cDNAを用いた植物ゲノムの機能・発現解析. 蛋白質核酸酵素, Vol. 48, pp. 1890-1898.
2002
Original Papers
- Kuroda, H., Takahashi, N., Shimada, H., Seki, M., Shinozaki, K. and Matsui, M. (2002) Classification and expression analysis of Arabidopsis F-box-containing protein genes. Plant Cell Physiol, 43, 1073-1085.
- Satoh, R., Nakashima, K., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2002) ACTCAT, a novel cis-acting element for proline- and hypoosmolarity-responsive expression of the ProDH gene encoding proline dehydrogenase in Arabidopsis. Plant Physiol, 130, 709-719.
- Ito, T. and Shinozaki, K. (2002) The MALE STERILITY1 gene of Arabidopsis, encoding a nuclear protein with a PHD-finger motif, is expressed in tapetal cells and is required for pollen maturation. Plant Cell Physiol, 43, 1285-1292.
- Seki, M., Ishida, J., Narusaka, M., Fujita, M., Nanjo, T., Umezawa, T., Kamiya, A., Nakajima, M., Enju, A., Sakurai, T., Satou, M., Akiyama, K., Yamaguchi-Shinozaki, K., Carninci, P., Kawai, J., Hayashizaki, Y. and Shinozaki, K. (2002a) Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray. Funct Integr Genomics, 2, 282-291.
- Osakabe, Y., Miyata, S., Urao, T., Seki, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2002) Overexpression of Arabidopsis response regulators, ARR4/ATRR1/IBC7 and ARR8/ATRR3, alters cytokinin responses differentially in the shoot and in callus formation. Biochem. Biophys. Res. Commun., 293, 806-815.
- Ichimura, K., Shinozaki, K., Tena, G., Sheen, J., Henry, Y., Champion, A., Kreis, M., Zhang, S. Q., Hirt, H., Wilson, C., Heberle-Bors, E., Ellis, B. E., Morris, P. C., Innes, R. W., Ecker, J. R., Scheel, D., Klessig, D. F., Machida, Y., Mundy, J., Ohashi, Y., Walker, J. C. and Grp, M. (2002) Mitogen-activated protein kinase cascades in plants: a new nomenclature. Trends Plant Sci., 7, 301-308.
- Sakuma, Y., Liu, Q., Dubouzet, J. G., Abe, H., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2002) DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. Biochem. Biophys. Res. Commun., 290, 998-1009.
- Taji, T., Ohsumi, C., Iuchi, S., Seki, M., Kasuga, M., Kobayashi, M., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2002) Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana. Plant J, 29, 417-426.
- Ulm, R., Ichimura, K., Mizoguchi, T., Peck, S. C., Zhu, T., Wang, X., Shinozaki, K. and Paszkowski, J. (2002) Distinct regulation of salinity and genotoxic stress responses by Arabidopsis MAP kinase phosphatase 1. The EMBO journal, 21, 6483-6493.
- Yoshida, R., Hobo, T., Ichimura, K., Mizoguchi, T., Takahashi, F., Aronso, J., Ecker, J. R. and Shinozaki, K. (2002) ABA-activated SnRK2 protein kinase is required for dehydration stress signaling in Arabidopsis. Plant Cell Physiol, 43, 1473-1483.
- Ito, T., Motohashi, R., Kuromori, T., Mizukado, S., Sakurai, T., Kanahara, H., Seki, M. and Shinozaki, K. (2002a) A new resource of locally transposed Dissociation elements for screening gene-knockout lines in silico on the Arabidopsis genome. Plant Physiol, 129, 1695-1699.
- Seki, M., Narusaka, M., Ishida, J., Nanjo, T., Fujita, M., Oono, Y., Kamiya, A., Nakajima, M., Enju, A., Sakurai, T., Satou, M., Akiyama, K., Taji, T., Yamaguchi-Shinozaki, K., Carninci, P., Kawai, J., Hayashizaki, Y. and Shinozaki, K. (2002b) Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J, 31, 279-292.
- Han, S., Inoue, H., Terada, T., Kamoda, S., Saburi, Y., Sekimata, K., Saito, T., Kobayashi, M., Shinozaki, K., Yoshida, S. and Asami, T. (2002) Design and synthesis of lignostilbene-alpha,beta-dioxygenase inhibitors. Bioorg Med Chem Lett, 12, 1139-1142.
- Seki, M., Narusaka, M., Kamiya, A., Ishida, J., Satou, M., Sakurai, T., Nakajima, M., Enju, A., Akiyama, K., Oono, Y., Muramatsu, M., Hayashizaki, Y., Kawai, J., Carninci, P., Itoh, M., Ishii, Y., Arakawa, T., Shibata, K., Shinagawa, A. and Shinozaki, K. (2002c) Functional annotation of a full-length Arabidopsis cDNA collection. Science, 296, 141-145.
- Ito, T., Motohashi, R. and Shinozaki, K. (2002b) Preparation of transposon insertion lines and determination of insertion sites in Arabidopsis genome. Methods Mol Biol, 182, 209-219.
Review Papers
- Yamaguchi-Shinozaki, K., Kasuga, M., Liu, Q., Nakashima, K., Sakuma, Y., Abe, H., Shinwari, Z. K., Seki, M. and Shinozaki, K. (2002a) Biological mechanisms of drought stress response. JIRCAS Working Report 23, 1-8.
- Yamaguchi-Shinozaki, K., Kasuga, M., Liu, Q., Nakashima, K., Sakuma, Y., Abe, H., Shinwari, Z. K., Seki, M. and Shinozaki, K. (2002b) Development of Drought-Resistant and Water Stress-Tolerant Crops through Biotechnology. JIRCAS International Symposium Series No.10: The 8th JIRCAS International Symposium: Water for Sustainable Agriculture in Developing Regions, 23-34.
- 藤田 美紀, 藤田 泰成, 篠崎 和子 and 篠崎 一雄. (2002) シロイヌナズナのRNAiプロトコル. 細胞工学. 秀潤社, Vol. 21, pp. 1352-1360
- 太治 輝昭, 楠城 時彦, 井内 聖 and 篠崎 一雄. (2002) トランスジェニックを系を用いた水ストレス耐性植物の作出. 細胞工学. 秀潤社, Vol. 21, pp. 1455-1459.
- 太治 輝昭 and 篠崎 一雄. (2002a) レギュロンバイオテクノロジーによる環境ストレス耐性植物. バイオサイエンスとインダストリー. 丸井工文社, Vol. 61, pp. 9-10.
- 篠崎 一雄. (2002) 環境ストレス耐性植物の分子育種. 細胞工学. 秀潤社, Vol. 21, p. 1454
- 太治 輝昭 and 篠崎 一雄. (2002b) 乾燥耐性作物の分子育種. バイオサイエンスとインダストリー. 丸井工文社, Vol. 61, pp. 33-34.
2001
Original Papers
- Yuasa, T., Ichimura, K., Mizoguchi, T. and Shinozaki, K. (2001) Oxidative stress activates ATMPK6, an Arabidopsis homologue of MAP kinase. Plant Cell Physiol, 42, 1012-1016.
- Seki, M., Narusaka, M., Yamaguchi-Shinozaki, K., Carninci, P., Kawai, J., Hayashizaki, Y. and Shinozaki, K. (2001a) Arabidopsis encyclopedia using full-length cDNAs and its application. Plant Physiol. Biochem., 39, 211-220.
- Yoshiba, Y., Aoki, C., Iuchi, S., Nanjo, T., Seki, M., Sekiguchi, F., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2001) Characterization of four extensin genes in Arabidopsis thaliana by differential gene expression under stress and non-stress conditions. DNA Res., 8, 115-122.
- Katagiri, T., Takahashi, S. and Shinozaki, K. (2001) Involvement of a novel Arabidopsis phospholipase D, AtPLDd, in dehydration-inducible accumulation of phosphatidic acid in stress signalling. Plant J, 26, 595-605.
- Seki, M., Narusaka, M., Abe, H., Kasuga, M., Yamaguchi-Shinozaki, K., Carninci, P., Hayashizaki, Y. and Shinozaki, K. (2001b) Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell, 13, 61-72.
- Inoue, T., Higuchi, M., Hashimoto, Y., Seki, M., Kobayashi, M., Kato, T., Tabata, S., Shinozaki, K. and Kakimoto, T. (2001) Identification of CRE1 as a cytokinin receptor from Arabidopsis. Nature, 409, 1060-1063.
- Takahashi, S., Katagiri, T., Hirayama, T., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2001) Hyperosmotic stress induces a rapid and transient increase in inositol 1,4,5-trisphosphate independent of abscisic acid in Arabidopsis cell culture. Plant Cell Physiol., 42, 214-222.
- Motohashi, R., Nagata, N., Ito, T., Takahashi, S., Hobo, T., Yoshida, S. and Shinozaki, K. (2001) An essential role of a TatC homologue of a Delta pH- dependent protein transporter in thylakoid membrane formation during chloroplast development in Arabidopsis thaliana. Proc Natl Acad Sci U S A, 98, 10499-10504.
- Iuchi, S., Kobayashi, M., Taji, T., Naramoto, M., Seki, M., Kato, T., Tabata, S., Kakubari, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2001) Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in Arabidopsis. Plant J, 27, 325-333.
- Adam, Z., Adamska, I., Nakabayashi, K., Ostersetzer, O., Haussuhl, K., Manuell, A., Zheng, B., Vallon, O., Rodermel, S. R., Shinozaki, K. and Clarke, A. K. (2001) Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature. Plant Physiol, 125, 1912-1918.
Review Papers
- 中島 一雄, 篠崎 和子 and 篠崎 一雄 (2001) 植物は乾燥ストレスに対してどのように対処しているか. 栄養と健康のライフサイエンス, 5, 67-73